Name:（姓名）：Jianbo Yuan

Title：（职称）：Associate professor

Research Field:（研究领域）：Marine invertebrate genomics and evolutionary biology

Tel/Fax:（电话/传真）：0532-82898786

E-mail:（电邮）： yuanjb@qdio.ac.cn

Address:（通信地址）: No. 7 Nanhai Road, Qingdao, China

Resume:（个人简历，总结性叙述）

2018.01 - present, Associated Professor, Institute of Oceanology, Chinese Academy of Sciences.

2017.01 - 2017.12, Assistant Professor, Institute of Oceanology, Chinese Academy of Sciences.

2014.07 - 2017.01, Post doctor, Institute of Oceanology, Chinese Academy of Sciences.

Education：（教育经历）

2009.09 - 2014.07, Institute of Oceanology, Chinese Academy of Sciences, Ph. D.

2005.09 - 2009.07, University of Electronic Science and Technology of China, B.Sc.

Research Interests:（研究方向）

1. Crustacean genomics

Genome sequencing, assembly, and deep investigation of the economically important shirmps and evolutionary important crustaceans. Comparative genomics analysis on special genomic characteristics and biological traits.

2. Adaptive evolution of marine crustaceans

Investigate molecular mechanisms of marine crustaceans under different selective pressures. Study on adaptive evolution and convergent evolution of crustaceans.

3. Functional gene verification

Functional gene identification and verification using various experiment methods.

Selected Publications:（发表论文、出版书籍）:

 (1) Jianbo Yuan+, Xiaojun Zhang+, Min Wang+, Yamin Sun, Chengzhang Liu, Shihao Li,Yang Yu, Yi Gao, Fei Liu, Xiaoxi Zhang, Jie Kong, Guangyi Fan, Chengsong Zhang, Lu Feng*, Jianhai Xiang* & Fuhua Li*. Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp. Communications Biology. 2021, 4(186):1-14.

 (2) Xiaojun Zhang+, Jianbo Yuan+, Yamin Sun+, Shihao Li+, Yi Gao+, Yang Yu+, et al. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting. Nature communications. 2019, 10(356):1-14. (Equal contributor, IF=13.81)

 (3) Jianbo Yuan, Xiaojun Zhang, Yi Gao, Xiaoxi Zhang*, Chengzhang Liu, Jianhai Xiang, and Fuhua Li*. Adaptation and molecular evidence for convergence in decapod crustaceans to deep-sea hydrothermal vent environments. Molecular Ecology. 2020, 29:3954–3969. (IF=5.96)

 (4) Zhaoxia Cui+^,*, Yuan Liu+, Jianbo Yuan+, Xiaojun Zhang+, Tomer Ventura+, Ka Yan Ma, Shuai Sun, Chengwen Song, Dongliang Zhan, Yanan Yang, Hourong Liu, Guangyi Fan, Qingle Cai, Jing Du, Jing Qin, Chengcheng Shi, Shijie Hao, Quinn P. Fitzgibbon, Gregory G. Smith, Jianhai Xiang, Tin-Yam Chan, Min Hui, Chenchang Bao, Fuhua Li^* and Ka Hou Chu^*. The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation. Nature communications. 2021. doi:10.1038/s41467-021-22604-3 (Equal contributor, IF=13.81)

 (5) Xiaojun Zhang+, Lina Sun+, Jianbo Yuan+, Yamin Sun+, Yi Gao+, Libin Zhang+, Shihao Li+, Hui Dai, Jean-Franc？ois Hamel, Chengzhang Liu,Yang Yu, Shilin Liu, Wenchao Lin, Kaimin Guo, Songjun Jin, Peng Xu, Kenneth B. Storey, Pin Huan, Tao Zhang, Yi Zhou, Jiquan Zhang, Chenggang Lin,Xiaoni Li, Lili Xing, Da Huo, Mingzhe Sun, Lei Wang, Annie Mercier*, Fuhua Li*, Hongsheng Yang*, Jianhai Xiang*. The sea cucumber genome provides insights into morphological evolution and visceral regeneration. Plos Biology. 2017, 15(10): e2003790. (Equal contributor， IF=9.79)

 (6) Jianbo Yuan, Xiaojun Zhang, Fuhua Li and Jianhai Xiang*. Genome sequencing and assembly strategies and a comparative analysis of the genomic characteristics in penaeid shrimp species. Frontiers in genetics. 2021, doi: 10.3389/fgene.2021.658619.

 (7) Jianbo Yuan, Yi Gao, Lina Sun, Songjun Jin, Xiaojun Zhang*, Chengzhang Liu, Fuhua Li and Jianhai Xiang. Wnt signaling pathway linked to intestinal regeneration via evolutionary patterns and gene expression in the sea cucumber Apostichopus japonicus. Frontiers in genetics. 2019, 10(112):1-13. (IF=4.15)

 (8) Xiaoxi Zhang, Jianbo Yuan*, Xiaojun Zhang*, Jianhai Xiang and Fuhua Li. Genomic Characterization and Expression of Juvenile Hormone Esterase-Like Carboxylesterase Genes in Pacific White Shrimp, Litopenaeus vannamei. International Journal of Molecular Sciences. 2020, 21(5444):1-17.( Corresponding author, IF=4.65)

 (9) Zhibin Gan+, Jianbo Yuan+, Xinming Liu, Dong Dong, Fuhua Li* and Xinzheng Li*. Comparative transcriptomic analysis of deep- and shallow-water barnacle species (Cirripedia, Poecilasmatidae) provides insights into deep-sea adaptation of sessile crustaceans. BMC Genomics. 2020, 21:240:1-13. (Equal contributor， IF=4.09)

 (10) Xiaoxi Zhang, Jianbo Yuan*, Xiaojun Zhang, Chengzhang Liu, Jianhai Xiang, Fuhua Li*. Genome-Wide Analysis of Alternative Splicing Provides Insights into Stress Response of the Pacific white shrimp, Litopenaeus vannamei. Frontiers in Genetics. 2019, doi: 10.3389/fgene.2019.00845. (Corresponding author, IF=4.15)

 (11) Jianbo Yuan, Yi Gao, Xiaojun Zhang*, Chengzhang Liu, Fuhua Li, Jianhai Xiang*. Genome sequences of marine shrimp Exopalaemon carinicauda Holthuis provide insights into genome size evolution of Caridea. Marine Drugs. 2017, 15(213):1-18. (IF=4.45)

 (12) Jianbo Yuan, Xiaojun Zhang, Chengzhang Liu, Yang Yu, Jiankai Wei, Fuhua Li and Jianhai Xiang*. Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon. Marine Genomics. 2018, 39:22-25. (IF=1.92)

 (13) Jianbo Yuan, Xiaojun Zhang*, Chengzhang Liu, Hu Duan, Fuhua Li, Jianhai Xiang*. Convergent Evolution of the Osmoregulation System in Decapod Shrimps. Marine Biotechnology. 2017, 19:76-88. (IF=3.06)

 (14) Jianbo Yuan, Xiaojun Zhang*, Chengzhang Liu, Xiaoqing Sun, Elayaraja Sivaramasamy, Fuhua Li, Jianhai Xiang*. Comparative genomics analysis of decapod shrimps in the Pancrustacea clade. Biochemical Systematics and Ecology. 2016, 64:111-121. (IF=0.93)

 (15) Jianbo Yuan, Meiling Yang, Jianfeng Ren, Beide Fu, Yun Yu, Feng Jiang and Xiaojun Zhang*. Analysis of genomic characters reveals that four distinct gene clusters are correlated with different functions in Burkholderia cenocepacia AU 1054. Applied Microbiology and Biotechnology. 2014. 98:361-372. (IF=3.34)

 (16) Jianbo Yuan, Xiaojun Zhang*, Chengzhang Liu, Jiankai Wei, Fuhua Li, Jianhai Xiang*. Horizontally transferred genes in the genome of Pacific white shrimp, Litopenaeus vannamei. BMC evolutionary biology. 2013. 13(165):1-16. (IF=3.41)

 (17) Jianbo Yuan, Qingming Zhu and Bin Liu*. Phylogenetic and Biological Significance of Evolutionary Elements. PLoS ONE. 2013, 9(1): e84330. (IF=3.53)